Tools to help you visualize, analyze, and manage microarray data
Illumina offers software products designed to facilitate analysis of microarray data for many applications. These solutions enable researchers to obtain timely, high-quality results while spending less time setting up complex data analysis workflows.
| Software | Description | Key applications | Variant types detected | Deployment options |
|---|---|---|---|---|
| DRAGEN Array secondary analysis |
Accurate, comprehensive, and efficient secondary analysis of Infinium microarray data. |
Genotyping, pharmacogenomics (PGx), methylation QC |
Single nucleotide variants (SNVs), copy number variants (CNVs) | Local or cloud |
| GenomeStudio Software | Performance-optimized tools and a user-friendly graphical interface to visualize and extract meaningful results from data generated on Illumina array platforms. | Genotyping, methylation analysis, polyploid genotyping | Single nucleotide polymorphisms (SNPs), CNVs, loss of heterozygosity (LOH) | Local, included with array purchase |
| Polygenic Risk Score Software–Predict module | Ancestry-informed polygenic risk score (PRS) predictions to identify genetic disease risk without the need for extensive bioinformatics resources. | Polygenic risk score research | Variants selected from a discovery cohort | Cloud |
| BlueFuse Multi Software |
Detect and display areas of potential chromosomal abnormality within the genome, with an efficient workflow and intuitive user interface. | Molecular cytogenetics, in vitro fertilization (IVF) research, preimplantation genetic screening (PGS) research | Chromosomal microdeletions and microduplications, SNPs, Absence of heterozygosity (AOH), aneuploidy | Local, included with Illumina cytogenetic and IVF technologies |
| Beeline Software | Direct path to data analysis for large array experiments, offering flexible filtering to reduce experimental array data size for import into GenomeStudio Software. | Genotyping | Produces genotyping calls for further processing in GenomeStudio | Local, included with array purchase |
DesignStudio Microarray Assay Designer
Create custom genotyping assays and interrogate virtually any marker for any species.
Track samples and manage workflows to save time and minimize errors while scaling your lab needs.
Illumina Lab Automation Software Solution
Manage liquid-handling robots and run automated protocol steps for microarray workflows and track the results of each sample.
Set up and monitor runs, access and analyze data in the cloud, and share with collaborators.
Build analysis pipelines, execute production workflows at scale, and explore and share results and data in the cloud.
Researchers in Shanghai leverage BlueFuse Multi Software in their preimplantation genetic haplotyping process.
Beeline Software enables Prenetics to create a high-throughput laboratory by significantly reducing analysis time.
In this webinar, Dr. Matija Snuderl discusses research into machine learning and epigenetic signatures to improve the accuracy of brain tumor and sarcoma classifications.
Dr. Simon Andrew Zwolinksi discusses how his lab increased efficiency with an Infinium array and BlueFuse Software.
Contact us to learn more about our software offerings.
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